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草业学报 ›› 2018, Vol. 27 ›› Issue (3): 67-77.DOI: 10.11686/cyxb2017422

• 研究论文 • 上一篇    下一篇

基于转录组数据库的高羊茅HD-Zip I转录因子的鉴定及表达模式解析

庄黎丽, 王剑, 杨志民*   

  1. 南京农业大学草业学院,江苏 南京 210095;
  • 收稿日期:2017-10-18 修回日期:2017-12-20 出版日期:2018-03-20 发布日期:2018-03-20
  • 通讯作者: * E-mail: nauyzm@njau.edu.cn
  • 作者简介:庄黎丽(1982-),女,江苏常州人,讲师,博士。E-mail: zhuanglili2001@163.com
  • 基金资助:
    国家自然科学基金面上项目“ FaMAX2 介导干旱抑制苇状羊茅分蘖发育的分子机制”(31672480),中央高校基本科研业务费青年项目“干旱胁迫下高羊茅分蘖发育调控的分子机理研究”(Y0201500057)和国家自然科学基金青年基金“干旱胁迫下高羊茅分蘖发育调控的分子机理研究”(31401912)资助

Transcriptome-wide identification and expression analysis of HD-Zip I transcription factors in Festuca arundinacea

ZHUANG Li-li, WANG Jian, YANG Zhi-min*   

  1. College of Agro-Grassland Science, Nanjing Agricultural University, Nanjing 210095, China;
  • Received:2017-10-18 Revised:2017-12-20 Online:2018-03-20 Published:2018-03-20

摘要: 高等植物特有的同源异型-亮氨酸拉链蛋白(HD-Zip)家族转录因子在调控植物发育与逆境响应中起着重要作用。以生产中广泛应用的冷季型草高羊茅为研究材料,利用其目前已有的转录组序列,在Bioedit软件构建本地数据库。以水稻14个HD-ZIP I蛋白序列作为搜索请求,搜索本地数据库获得高羊茅中对应序列。结合序列分析及PCR克隆技术得到高羊茅13个HD-Zip I类成员的全长序列。系统进化树及MEME结构域分析发现,高羊茅13个HD-Zip I成员与水稻HD-Zip I家族成员进化关系接近,蛋白结构域的数目及排布方式也基本一致。采用荧光定量PCR技术分析短期及长期聚乙二醇6000模拟的干旱处理下11个FaHD-Zip I基因在高羊茅根颈中的mRNA相对表达水平。结果表明,短期干旱胁迫下,除FaHOX4和FaHOX6外,其余基因相对表达水平均发生一定程度的上调或者下调,且FaHOX22的响应程度最大;长期干旱胁迫下,所有基因的表达水平均在7或者14 d上调,FaHOX22在14 d时的表达水平比对照上调76.3倍。为基因组序列缺乏的非模式植物快速有效地进行基于转录组数据库的基因家族克隆及其功能研究提供了一种很好的方法。

Abstract: Homeodomain-leucine zipper proteins are unique to plants and regulate many aspects of plant development as well as plant tolerance to abiotic stress. However, the function of the most family members is largely unknown. Molecular studies of tall fescue lag behind other model species even though this plant is widely used as a cool-season turf grass. A local nucleotide database file was created in Bioedit software based on published and our own unpublished tall fescue transcriptome data. Using 14 HD-Zip I protein sequences of rice as the query, 13 counterparts in tall fescue were obtained by the Tblastn search program. Based on these obtained sequences, a full length open reading frame of the 13 FaHD-Zip I was cloned by nest PCR method. Phylogenetic and MEME motif analyses showed that all 13 FaHD-Zip I were closely related to the corresponding orthologs in rice. In addition, the number and arrangement mode of conserved motifs was nearly the same in the two species. qRT-PCR was adopted to analyze the expression pattern of 11 FaHD-Zip I in crowns under polyethylene 6000 (PEG6000) treatment. The relative expression level of FaHD-Zip I genes (except FaHOX4 and FaHOX6) were up- or down-regulated under short-term PEG6000 treatment, with FaHOX22 the most significantly up-regulated. All gene expression was induced in crowns of PEG6000-treated plants compared with that in control plants at 7 or 14 d. Relative expression level of FaHOX22 was up-regulated by 76.3 fold. This study provides a fast and efficient method for molecular cloning of certain transcription factor family members in species that lack genomic sequences. Furthermore, it promotes the future investigation of the molecular function of key factors that may serve a useful role in molecular breeding.