Acta Prataculturae Sinica ›› 2023, Vol. 32 ›› Issue (10): 40-57.DOI: 10.11686/cyxb2022461
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Bing-na SHEN1(), Pan-pan SHANG1, Bing(student) ZENG1, Lin-xiang LI2, Xing-yun YANG1, Lei BI1, Yu-qian ZHENG1, Ming-hao QU1, Wen-wen LI1, Xiao-li ZHOU1, Jun RAO1, Bing(teacher) ZENG1,3()
Received:
2022-11-04
Revised:
2023-01-16
Online:
2023-10-20
Published:
2023-07-26
Contact:
Bing(teacher) ZENG
Bing-na SHEN, Pan-pan SHANG, Bing(student) ZENG, Lin-xiang LI, Xing-yun YANG, Lei BI, Yu-qian ZHENG, Ming-hao QU, Wen-wen LI, Xiao-li ZHOU, Jun RAO, Bing(teacher) ZENG. Comparative metabolomics analysis of root systems of two Dactylis glomerata cultivars in response to submergence stress[J]. Acta Prataculturae Sinica, 2023, 32(10): 40-57.
组名 Group name | 差异显著的代谢物总数 Number of total significant | 显著上调的代谢物总数 Number of significant up | 显著下调的代谢物总数 Number of significant down |
---|---|---|---|
DB8h vs DB0h | 120 | 64 | 56 |
DB24h vs DB0h | 155 | 60 | 95 |
AB8h vs AB0h | 93 | 49 | 44 |
AB24h vs AB0h | 118 | 60 | 58 |
DB0h vs AB0h | 80 | 23 | 57 |
DB8h vs AB8h | 125 | 77 | 48 |
DB24h vs AB24h | 48 | 19 | 29 |
Table 1 Statistical result of metabolites
组名 Group name | 差异显著的代谢物总数 Number of total significant | 显著上调的代谢物总数 Number of significant up | 显著下调的代谢物总数 Number of significant down |
---|---|---|---|
DB8h vs DB0h | 120 | 64 | 56 |
DB24h vs DB0h | 155 | 60 | 95 |
AB8h vs AB0h | 93 | 49 | 44 |
AB24h vs AB0h | 118 | 60 | 58 |
DB0h vs AB0h | 80 | 23 | 57 |
DB8h vs AB8h | 125 | 77 | 48 |
DB24h vs AB24h | 48 | 19 | 29 |
类Class | 亚类Subclass | A | B | C | D | E | F | G |
---|---|---|---|---|---|---|---|---|
羧酸及其衍生物Carboxylic acids and derivatives | 氨基酸、多肽和类似物Amino acids, peptides, and analogues | 5 | 5 | 5 | 5 | 2 | 4 | 3 |
二羧酸及其衍生物Dicarboxylic acids and derivatives | 0 | 0 | 0 | 2 | 0 | 0 | 0 | |
类黄酮Isoflavonoids | 呋喃异黄酮Furanoisoflavonoids | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
羰基化合物Carbonyl compounds | 酮Ketones | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
黄酮类化合物Flavonoids | 1 | 3 | 2 | 1 | 4 | 1 | 1 | |
异黄酮类化合物Isoflavonoids | 异黄酮Isoflavones | 0 | 0 | 0 | 0 | 3 | 0 | 1 |
吲哚及其衍生物Indoles and derivatives | 吲哚羧酸及其衍生物Indolyl carboxylic acids and derivatives | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
有机氧化物Organooxygen compounds | 糖及其衍生物Carbohydrates and carbohydrate conjugates | 2 | 4 | 1 | 2 | 2 | 2 | 4 |
醇和多元醇Alcohols and polyols | 多元醇Polyols | 3 | 1 | 0 | 0 | 2 | 0 | 0 |
线性1,3-二芳基丙烷Linear 1,3-diarylpropanoids | 查尔酮和二氢查尔酮Chalcones and dihydrochalcones | 1 | 1 | 1 | 1 | 1 | 0 | 1 |
脂肪酰基Fatty acyls | 亚油酸及其衍生物Lineolic acids and derivatives | 2 | 1 | 2 | 1 | 0 | 1 | 0 |
脂肪酸和缀合物Fatty acids and conjugates | 2 | 1 | 3 | 2 | 2 | 4 | 1 | |
苯及取代衍生物Benzene and substituted derivatives | 0 | 1 | 0 | 0 | 0 | 1 | 1 | |
蝶呤及其衍生物Pteridines and derivatives | 萜类化合物和衍生物Pterins and derivatives | 0 | 0 | 1 | 0 | 2 | 3 | 4 |
有机磺酸及其衍生物Organic sulfonic acids and derivatives | 有机磺酸及其衍生物Organic sulfonic acids and derivatives | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
甘油磷脂类Glycerophospholipids | 甘油磷胆碱Glycerophocholines | 1 | 0 | 2 | 0 | 0 | 2 | 0 |
有机酸及其衍生物Organic acids and derivatives | 0 | 1 | 1 | 3 | 1 | 0 | 0 | |
其他Others | 0 | 1 | 0 | 1 | 0 | 2 | 2 |
Table 2 Statistical result of difference of metabolite number in each group
类Class | 亚类Subclass | A | B | C | D | E | F | G |
---|---|---|---|---|---|---|---|---|
羧酸及其衍生物Carboxylic acids and derivatives | 氨基酸、多肽和类似物Amino acids, peptides, and analogues | 5 | 5 | 5 | 5 | 2 | 4 | 3 |
二羧酸及其衍生物Dicarboxylic acids and derivatives | 0 | 0 | 0 | 2 | 0 | 0 | 0 | |
类黄酮Isoflavonoids | 呋喃异黄酮Furanoisoflavonoids | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
羰基化合物Carbonyl compounds | 酮Ketones | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
黄酮类化合物Flavonoids | 1 | 3 | 2 | 1 | 4 | 1 | 1 | |
异黄酮类化合物Isoflavonoids | 异黄酮Isoflavones | 0 | 0 | 0 | 0 | 3 | 0 | 1 |
吲哚及其衍生物Indoles and derivatives | 吲哚羧酸及其衍生物Indolyl carboxylic acids and derivatives | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
有机氧化物Organooxygen compounds | 糖及其衍生物Carbohydrates and carbohydrate conjugates | 2 | 4 | 1 | 2 | 2 | 2 | 4 |
醇和多元醇Alcohols and polyols | 多元醇Polyols | 3 | 1 | 0 | 0 | 2 | 0 | 0 |
线性1,3-二芳基丙烷Linear 1,3-diarylpropanoids | 查尔酮和二氢查尔酮Chalcones and dihydrochalcones | 1 | 1 | 1 | 1 | 1 | 0 | 1 |
脂肪酰基Fatty acyls | 亚油酸及其衍生物Lineolic acids and derivatives | 2 | 1 | 2 | 1 | 0 | 1 | 0 |
脂肪酸和缀合物Fatty acids and conjugates | 2 | 1 | 3 | 2 | 2 | 4 | 1 | |
苯及取代衍生物Benzene and substituted derivatives | 0 | 1 | 0 | 0 | 0 | 1 | 1 | |
蝶呤及其衍生物Pteridines and derivatives | 萜类化合物和衍生物Pterins and derivatives | 0 | 0 | 1 | 0 | 2 | 3 | 4 |
有机磺酸及其衍生物Organic sulfonic acids and derivatives | 有机磺酸及其衍生物Organic sulfonic acids and derivatives | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
甘油磷脂类Glycerophospholipids | 甘油磷胆碱Glycerophocholines | 1 | 0 | 2 | 0 | 0 | 2 | 0 |
有机酸及其衍生物Organic acids and derivatives | 0 | 1 | 1 | 3 | 1 | 0 | 0 | |
其他Others | 0 | 1 | 0 | 1 | 0 | 2 | 2 |
类别Category | A | B | C | D | E | F | G |
---|---|---|---|---|---|---|---|
氨基酸代谢Amino acid metabolism | 4 | 4 | 3 | 6 | 1 | 1 | 1 |
碳水化合物代谢Carbohydrate metabolism | 1 | 2 | 1 | 1 | 3 | 4 | 1 |
辅助因子和维生素的代谢Metabolism of cofactors and vitamins | 1 | 1 | 2 | 0 | 0 | 1 | 3 |
其他次生代谢产物生物合成Biosynthesis of other secondary metabolites | 2 | 0 | 1 | 1 | 2 | 1 | 0 |
脂质代谢Lipid metabolism | 0 | 3 | 1 | 0 | 0 | 1 | 3 |
全局和总览图Global and overview maps | 1 | 0 | 1 | 1 | 1 | 0 | 0 |
其他氨基酸的代谢Metabolism of other amino acids | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
核苷酸代谢Nucleotide metabolism | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
翻译Translation | 0 | 0 | 1 | 1 | 0 | 0 | 1 |
膜运输Membrane transport | 0 | 0 | 0 | 0 | 1 | 1 | 0 |
萜类和聚酮化合物的代谢Metabolism of terpenoids and polyketones | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Table 3 Statistical result of KEGG pathway for each group
类别Category | A | B | C | D | E | F | G |
---|---|---|---|---|---|---|---|
氨基酸代谢Amino acid metabolism | 4 | 4 | 3 | 6 | 1 | 1 | 1 |
碳水化合物代谢Carbohydrate metabolism | 1 | 2 | 1 | 1 | 3 | 4 | 1 |
辅助因子和维生素的代谢Metabolism of cofactors and vitamins | 1 | 1 | 2 | 0 | 0 | 1 | 3 |
其他次生代谢产物生物合成Biosynthesis of other secondary metabolites | 2 | 0 | 1 | 1 | 2 | 1 | 0 |
脂质代谢Lipid metabolism | 0 | 3 | 1 | 0 | 0 | 1 | 3 |
全局和总览图Global and overview maps | 1 | 0 | 1 | 1 | 1 | 0 | 0 |
其他氨基酸的代谢Metabolism of other amino acids | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
核苷酸代谢Nucleotide metabolism | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
翻译Translation | 0 | 0 | 1 | 1 | 0 | 0 | 1 |
膜运输Membrane transport | 0 | 0 | 0 | 0 | 1 | 1 | 0 |
萜类和聚酮化合物的代谢Metabolism of terpenoids and polyketones | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
组别 Group | KEGG通路名称 KEGG pathway | 参与通路的差异代谢物 Differential metabolites |
---|---|---|
DB8h vs DB0h | 泛酸盐和CoA生物合成Pantothenate and CoA biosynthesis | 泛酸Pantothenic acid;泛醇Panthenol;尿嘧啶Uracil |
色氨酸代谢Tryptophan metabolism | 吲哚Indole;色氨酸Tryptophan | |
β-丙氨酸代谢Beta-alanine metabolism | 泛酸Pantothenic acid;尿嘧啶Uracil | |
类黄酮生物合成Flavonoid biosynthesis | 橙皮素Hesperetin;柚皮素查尔酮Naringenin chalcone;甘草素Liquiritigenin | |
DB24h vs DB0h | α-亚油酸代谢Alpha-linolenic acid metabolism | 茉莉酸Jasmonic acid |
丙酸酯代谢Propanoate metabolism | 琥珀酸Succinic acid;甲基丙二酸Methylmalonic acid | |
类黄酮生物合成Flavonoid biosynthesis | 芹黄素Apigenin;新橙皮苷Neohesperidin;柚皮素Naringenin;柚皮苷Naringin | |
AB8h vs AB0h | 氨基糖和核苷酸糖代谢Amino sugar and nucleotide sugar metabolism | D-半乳糖醛酸D-galacturonic acid;UDP-N-乙酰氨基葡萄糖UDP-N-acetylglucosamine;D-甘露糖6-磷酸D-mannose6-phosphate |
氨酰-tRNA生物合成Aminoacyl-tRNA biosynthesis | O-磷酸-L-丝氨酸O-phospho-L-serine;L-谷氨酸L-glutamic acid;L-酪氨酸 L-tyrosine;色氨酸Tryptophan | |
甘氨酸、丝氨酸和苏氨酸代谢Glycine, serine and threonine metabolism | O-磷酸-L-丝氨酸O-phospho-L-serine;色氨酸Tryptophan | |
硫代葡萄糖苷生物合成Glucosinolate biosynthesis | L-酪氨酸L-tyrosine;色氨酸Tryptophan | |
AB24h vs AB0h | 苯丙氨酸、酪氨酸和色氨酸生物合成Phenylalanine, tyrosine and tryptophan biosynthesis | L-酪氨酸L-tyrosine;吲哚Indole;D-赤藓糖-4-磷酸D-erythrose-4-phosphate;色氨酸Tryptophan |
色氨酸代谢Tryptophan metabolism | 吲哚Indole;色氨酸Tryptophan | |
丙酸酯代谢Propanoate metabolism | 琥珀酸Succinic acid;甲基丙二酸Methylmalonic acid | |
硫代葡萄糖苷生物合成Glucosinolate biosynthesis | L-酪氨酸L-tyrosine;色氨酸Tryptophan | |
DB0h vs AB0h | ABC转运因子ABC transporters | D-半乳糖醛酸D-galacturonic acid;L-鸟氨酸L-ornithine;蔗糖Sucrose;L-组氨酸L-histidine |
β-丙氨酸代谢Beta-alanine metabolism | 泛酸Pantothenic acid;L-组氨酸L-histidine | |
淀粉和蔗糖代谢Starch and sucrose metabolism | 蔗糖Sucrose;6-磷酸海藻糖Trehalose 6-phosphate | |
二萜生物合成Diterpenoid biosynthesis | 铁锈醇Ferruginol;赤霉素A7 Gibberellin A7 | |
DB8h vs AB8h | ABC转运因子ABC transporters | D-半乳糖醛酸D-galacturonic acid;D-鸟氨酸D-ornithine;蔗糖Sucrose |
抗坏血酸与醛酸代谢Ascorbate and aldarate metabolism | D-半乳糖醛酸D-galacturonic acid;D-糖酸D-saccharic acid | |
淀粉和蔗糖代谢Starch and sucrose metabolism | 异麦芽糖Isomaltose;蔗糖Sucrose | |
DB24h vs AB24h | 淀粉和蔗糖代谢Starch and sucrose metabolism | 异麦芽糖Isomaltose;6-磷酸海藻糖Trehalose 6-phosphate |
核黄素代谢Riboflavin metabolism | 核黄素Riboflavin | |
类黄酮生物合成Flavonoid biosynthesis | 芹菜素Apigenin;普鲁宁Prunin;柚皮素查尔酮Naringenin chalcone | |
黄酮和黄酮醇的生物合成Flavone and flavonol biosynthesis | 芹菜素Apigenin;芸香甙Rutin |
Table 4 Annotation of the main KEGG pathways for each group
组别 Group | KEGG通路名称 KEGG pathway | 参与通路的差异代谢物 Differential metabolites |
---|---|---|
DB8h vs DB0h | 泛酸盐和CoA生物合成Pantothenate and CoA biosynthesis | 泛酸Pantothenic acid;泛醇Panthenol;尿嘧啶Uracil |
色氨酸代谢Tryptophan metabolism | 吲哚Indole;色氨酸Tryptophan | |
β-丙氨酸代谢Beta-alanine metabolism | 泛酸Pantothenic acid;尿嘧啶Uracil | |
类黄酮生物合成Flavonoid biosynthesis | 橙皮素Hesperetin;柚皮素查尔酮Naringenin chalcone;甘草素Liquiritigenin | |
DB24h vs DB0h | α-亚油酸代谢Alpha-linolenic acid metabolism | 茉莉酸Jasmonic acid |
丙酸酯代谢Propanoate metabolism | 琥珀酸Succinic acid;甲基丙二酸Methylmalonic acid | |
类黄酮生物合成Flavonoid biosynthesis | 芹黄素Apigenin;新橙皮苷Neohesperidin;柚皮素Naringenin;柚皮苷Naringin | |
AB8h vs AB0h | 氨基糖和核苷酸糖代谢Amino sugar and nucleotide sugar metabolism | D-半乳糖醛酸D-galacturonic acid;UDP-N-乙酰氨基葡萄糖UDP-N-acetylglucosamine;D-甘露糖6-磷酸D-mannose6-phosphate |
氨酰-tRNA生物合成Aminoacyl-tRNA biosynthesis | O-磷酸-L-丝氨酸O-phospho-L-serine;L-谷氨酸L-glutamic acid;L-酪氨酸 L-tyrosine;色氨酸Tryptophan | |
甘氨酸、丝氨酸和苏氨酸代谢Glycine, serine and threonine metabolism | O-磷酸-L-丝氨酸O-phospho-L-serine;色氨酸Tryptophan | |
硫代葡萄糖苷生物合成Glucosinolate biosynthesis | L-酪氨酸L-tyrosine;色氨酸Tryptophan | |
AB24h vs AB0h | 苯丙氨酸、酪氨酸和色氨酸生物合成Phenylalanine, tyrosine and tryptophan biosynthesis | L-酪氨酸L-tyrosine;吲哚Indole;D-赤藓糖-4-磷酸D-erythrose-4-phosphate;色氨酸Tryptophan |
色氨酸代谢Tryptophan metabolism | 吲哚Indole;色氨酸Tryptophan | |
丙酸酯代谢Propanoate metabolism | 琥珀酸Succinic acid;甲基丙二酸Methylmalonic acid | |
硫代葡萄糖苷生物合成Glucosinolate biosynthesis | L-酪氨酸L-tyrosine;色氨酸Tryptophan | |
DB0h vs AB0h | ABC转运因子ABC transporters | D-半乳糖醛酸D-galacturonic acid;L-鸟氨酸L-ornithine;蔗糖Sucrose;L-组氨酸L-histidine |
β-丙氨酸代谢Beta-alanine metabolism | 泛酸Pantothenic acid;L-组氨酸L-histidine | |
淀粉和蔗糖代谢Starch and sucrose metabolism | 蔗糖Sucrose;6-磷酸海藻糖Trehalose 6-phosphate | |
二萜生物合成Diterpenoid biosynthesis | 铁锈醇Ferruginol;赤霉素A7 Gibberellin A7 | |
DB8h vs AB8h | ABC转运因子ABC transporters | D-半乳糖醛酸D-galacturonic acid;D-鸟氨酸D-ornithine;蔗糖Sucrose |
抗坏血酸与醛酸代谢Ascorbate and aldarate metabolism | D-半乳糖醛酸D-galacturonic acid;D-糖酸D-saccharic acid | |
淀粉和蔗糖代谢Starch and sucrose metabolism | 异麦芽糖Isomaltose;蔗糖Sucrose | |
DB24h vs AB24h | 淀粉和蔗糖代谢Starch and sucrose metabolism | 异麦芽糖Isomaltose;6-磷酸海藻糖Trehalose 6-phosphate |
核黄素代谢Riboflavin metabolism | 核黄素Riboflavin | |
类黄酮生物合成Flavonoid biosynthesis | 芹菜素Apigenin;普鲁宁Prunin;柚皮素查尔酮Naringenin chalcone | |
黄酮和黄酮醇的生物合成Flavone and flavonol biosynthesis | 芹菜素Apigenin;芸香甙Rutin |
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